Overview
ABSTRACT
Supramolecular chemistry is the basis of complex molecular assemblies omnipresent in biological machinery, where they provide both organization and functionality. This article first presents, through selected examples, some aspects of supramolecular chemistry in the living world. A second part deals with the concept of dynamic combinatorial chemistry, and also introduces the concept of molecular topology applied to the chemistry of catenanes, rotaxanes and knots.
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Read the articleAUTHORS
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Christophe BUCHER: CNRS Research Director - Chemistry Laboratory, École normale supérieure de Lyon, CNRS, UCBL, 46 Allée d'Italie, 69364 Lyon, France
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Jean-Pierre DUTASTA: CNRS Research Director - Chemistry Laboratory, École normale supérieure de Lyon, CNRS, UCBL, 46 Allée d'Italie, 69364 Lyon, France
INTRODUCTION
Supramolecular chemistry is based on principles governing the association and self-organization of molecules via non-covalent bonds, also known as weak bonds. This branch of chemistry began to develop in the late 1960s with the discovery of associations between two or more molecular entities. These assemblies have the property of being reversible, and their thermodynamic stability depends on the intermolecular forces at play. This is the basis on which the principle of molecular recognition was developed, in which the notions of geometric and electronic complementarity and pre-organization are essential. These different notions were presented in the article
In this second introduction to supramolecular chemistry, we begin by showing how recognition phenomena apply to the chemistry of living organisms. They are essential for maintaining the conformation and structural stability of biomolecules, giving them a wide range of functions. We'll also look at how the information contained in these supramolecular assemblies can be used in therapy and diagnostics. We then turn to the dynamic aspect of supramolecular chemistry through what J.-M. Lehn has called dynamic combinatorial chemistry, where self-assembly processes are used to identify or amplify molecular recognition phenomena. In a final section, we introduce some notions of molecular topology in relation to the design of more complex entities such as rotaxanes or molecular nodes, whose synthesis often requires supramolecular chemistry approaches.
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KEYWORDS
self-organization | catenanes | rotaxanes | molecular knots | supramolecular chemistry | dynamic combinatorial chemistry | molecular topology
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Physics and chemistry
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Introduction to supramolecular chemistry
Bibliography
Software tools
Visualization of complex molecular structures (proteins, polynucleotides): the NGL Viewer :
AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić and PW Rose. Web-based molecular graphics for large complexes. Bioinformatics: bty 419, 2018.doi :10.1093bioinformatics/bty 419
AS Rose and PW Hildebrand. NGL Viewer: a web application for molecular visualization. Nucl Acids Res...
Websites
Theoretical and Computational Biophysics Group at the University of Illinois at Urbana-Champaign (USA):
How enzymes work:
https://pdb101.rcsb.org/learn/videos/how-enzymes-work
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Events
Symposium: International Symposium on Macrocyclic and Supramolecular Chemistry (ISMSC), held annually.
International Conference on Calixarenes, is held every two years.
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