Article | REF: PHA1506 V1

Enzyme kinetics - Dynamic of transformation

Authors: Julien DUMOND, Serge KIRKIACHARIAN

Publication date: June 10, 2022

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ABSTRACT

The reactions catalyzed by enzymes follow the principles of chemical kinetics. The enzymatic kinetics consists in measuring the rates of the reactions which will make it possible to understand the functioning of these catalysts. This article addresses the performance of kinetic tests and the adjustments of the experimental curves obtained according to the mathematical laws of the studied enzymatic system. Enzymes following Michaelian kinetics and allosteric catalysts or those operating only in a given state of oligomerization are reviewed. These fundaments make it possible to study the different effectors, inhibitors or activators that modulate the activity of enzymes.

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AUTHORS

  • Julien DUMOND: Doctor in virology and enzymology - Consultant to pharmaceutical companies, Metz, France

  • Serge KIRKIACHARIAN: Doctor of Physical Sciences, Pharmacist - Professor Emeritus of Therapeutic Chemistry, Faculty of Pharmaceutical and Biological Sciences, Université Paris Sud - Honorary Head of Department, Paris Hospitals, France

 INTRODUCTION

This article discusses the most useful and common kinetics observed in enzymology, as well as those that can be used to characterize new types of inhibitor. Particular kinetics obtained for complex enzyme systems, such as the proteasome, are not considered. The most commonly used mathematical treatments of data are also reviewed.

The work of Victor Henri and Adrian Brown at the beginning of the 20th century plotted the initial speeds obtained for an enzymatic reaction as a function of different substrate concentrations, and enabled experimental points to be fitted to a hyperbolic curve. In this way, the authors hypothesized the prior establishment of the enzyme-substrate reaction intermediate essential for the enzymatic reaction to proceed.

This hypothesis was revived by Michaelis and Menten, and later by Briggs and Haldane. However, the mathematical model obtained did not make it possible to explain the functioning of all enzymes. At the same time, Hill described that the oxygen uptake curve for hemoglobin (a non-enzymatic protein) as a function of oxygen partial pressure corresponded to a sigmoid curve. Subsequently, it was shown that protein catalysts were capable of transforming their substrate(s) following this same sigmoid pattern. It wasn't until the 1960s that Monod, Wyman and Changeux on the one hand, and Koshland on the other, proposed molecular models to explain allostery. Subsequently, more complex kinetics of substrate(s) transformation by enzymes were described.

At the end of the article, readers will find a glossary and a table of notations and symbols used.

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KEYWORDS

enzymatic kinetics   |   Michaelis and Menten kinetics   |   allostery   |   effectors


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Enzymatic kinetics